PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.387680.2
Common NameCsa_7G360030, LOC101204984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 424aa    MW: 47049.4 Da    PI: 6.6839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.387680.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09303350455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.387680.2 303 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 350
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.27E-9297354No hitNo description
SuperFamilySSF474591.26E-16297364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16299364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6303350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDNQFFLNPT GISQSLMHFD SNPSIATWHQ QFSSPMDLPT QLPDLTHCSS SSHQSPPDCF  60
LNPVSDQSFQ FDSALSSMVS SPAASNSNIT NESFAIRELI GKLGGNSERR ILELSNSTAA  120
AALPPSSSSV AEFSSDPGFA ERAARFSCFG SRSFNGRQLT NEFGNYRSHL SIGNEKLSRV  180
SSSPSLKALG SEMNLQEHKN NSSSQEDESS LSNQDKTITN PRKRKAITKA KLKEPVVEAT  240
PEKESPKKLK TVERKENVKT EEDLKKNDEN SAEERQTKAN SKPPEAPKDY IHVRARRGQA  300
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ HQVEFLSMKL  360
ASVNTTRVDF NVDSLISSKQ YPNFGEDELQ SIVQMGFVQN QTQEISLQSH NFNLGSDQMK  420
IEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818020.0LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659208.10.0PREDICTED: transcription factor bHLH78 isoform X2
SwissprotQ9FJL43e-90BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0A0K8F40.0A0A0A0K8F4_CUCSA; Uncharacterized protein
STRINGGLYMA18G32560.11e-110(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-78bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]